I apparently initialized the commands for each server, which result in 114 commands being added. That is now fixed.

Hopefully this is the final fix for chat remaining on empty servers. (order matters!)
Configuration setting to allow multiple owners.
Fixed setlevel issues.
Organized Server class variables

SharedLibrary/Commands/NativeCommands.cs

@@ -7,7 +7,7 @@ using System.Threading.Tasks;
 
 namespace SharedLibrary.Commands
 {
-    class CQuit : Command
+    public class CQuit : Command
     {
         public CQuit(String N, String D, String U, Player.Permission P, int args, bool nT) : base(N, D, U, P, args, nT) { }
 
@@ -17,7 +17,7 @@ namespace SharedLibrary.Commands
         }
     }
 
-    class COwner : Command
+    public class COwner : Command
     {   
         public COwner(String N, String D, String U, Player.Permission P, int args, bool nT) : base(N, D, U, P, args, nT) { }
 
@@ -27,7 +27,6 @@ namespace SharedLibrary.Commands
             {
                 E.Origin.SetLevel(Player.Permission.Owner);
                 await E.Origin.Tell("Congratulations, you have claimed ownership of this server!");
-                E.Owner.owner = E.Origin;
                 E.Owner.Manager.GetClientDatabase().UpdatePlayer(E.Origin);
             }
             else
@@ -35,7 +34,7 @@ namespace SharedLibrary.Commands
         }
     }
 
-    class Cwarn : Command
+    public class Cwarn : Command
     {
         public Cwarn(String N, String D, String U, Player.Permission P, int args, bool nT) : base(N, D, U, P, args, nT) { }
 
@@ -43,13 +42,13 @@ namespace SharedLibrary.Commands
         {
             E.Target.lastOffense = E.Data.RemoveWords(1);
             if (E.Origin.Level <= E.Target.Level)
-                await E.Origin.Tell("You cannot warn " + E.Target.Name);
+                await E.Origin.Tell($"You do not have the required privileges to warn {E.Target.Name}");
             else
                 await E.Target.Warn(E.Target.lastOffense, E.Origin);   
         }
     }
 
-    class CWarnClear : Command
+    public class CWarnClear : Command
     {
         public CWarnClear(String N, String D, String U, Player.Permission P, int args, bool nT) : base(N, D, U, P, args, nT) { }
 
@@ -62,7 +61,7 @@ namespace SharedLibrary.Commands
         }
     }
 
-    class CKick : Command
+    public class CKick : Command
     {
         public CKick(String N, String D, String U, Player.Permission P, int args, bool nT) : base(N, D, U, P, args, nT) { }
 
@@ -70,13 +69,16 @@ namespace SharedLibrary.Commands
         {
             E.Target.lastOffense = E.Data.RemoveWords(1);
             if (E.Origin.Level > E.Target.Level)
+            {
+                await E.Owner.ExecuteEvent(new Event(Event.GType.Kick, E.Data, E.Origin, E.Target, E.Owner));
                 await E.Target.Kick(E.Target.lastOffense, E.Origin);
+            }
             else
-                await E.Origin.Tell($"You cannot kick {E.Target.Name}");            
+                await E.Origin.Tell($"You do not have the required privileges to kick {E.Target.Name}");            
         }
     }
 
-    class CSay : Command
+    public class CSay : Command
     {
         public CSay(String N, String D, String U, Player.Permission P, int args, bool nT) : base(N, D, U, P, args, nT) { }
 
@@ -86,13 +88,13 @@ namespace SharedLibrary.Commands
         }
     }
 
-    class CTempBan : Command
+    public class CTempBan : Command
     {
         public CTempBan(String N, String D, String U, Player.Permission P, int args, bool nT) : base(N, D, U, P, args, nT) { }
 
         public override async Task ExecuteAsync(Event E)
         {
-            E.Target.lastOffense = SharedLibrary.Utilities.RemoveWords(E.Data, 1);
+            E.Target.lastOffense = Utilities.RemoveWords(E.Data, 1);
             String Message = E.Target.lastOffense;
             if (E.Origin.Level > E.Target.Level)
             {
@@ -104,7 +106,7 @@ namespace SharedLibrary.Commands
         }
     }
 
-    class CBan : Command
+    public class CBan : Command
     {
         public CBan(String N, String D, String U, Player.Permission P, int args, bool nT) : base(N, D, U, P, args, nT) { }
 
@@ -119,6 +121,7 @@ namespace SharedLibrary.Commands
                 Message = "^1Player Banned: ^5" + E.Target.lastOffense;
             if (E.Origin.Level > E.Target.Level)
             {
+                await E.Owner.ExecuteEvent(new Event(Event.GType.Ban, E.Data, E.Origin, E.Target, E.Owner));
                 await E.Target.Ban(Message, E.Origin);
                 await E.Origin.Tell(String.Format("Sucessfully banned ^5{0} ^7({1})", E.Target.Name, E.Target.NetworkID));
             }
@@ -127,7 +130,7 @@ namespace SharedLibrary.Commands
         }
     }
 
-    class CUnban : Command
+    public class CUnban : Command
     {
         public CUnban(String N, String D, String U, Player.Permission P, int args, bool nT) : base(N, D, U, P, args, nT) { }
 
@@ -138,7 +141,7 @@ namespace SharedLibrary.Commands
         }
     }
 
-    class CWhoAmI : Command
+    public class CWhoAmI : Command
     {
         public CWhoAmI(String N, String D, String U, Player.Permission P, int args, bool nT) : base(N, D, U, P, args, nT) { }
 
@@ -149,7 +152,7 @@ namespace SharedLibrary.Commands
         }
     }
 
-    class CList : Command
+    public class CList : Command
     {
         public CList(String N, String D, String U, Player.Permission P, int args, bool nT) : base(N, D, U, P, args, nT) { }
 
@@ -182,7 +185,7 @@ namespace SharedLibrary.Commands
         }
     }
 
-    class CHelp : Command
+    public class CHelp : Command
     {
         public CHelp(String N, String D, String U, Player.Permission P, int args, bool nT) : base(N, D, U, P, args, nT) { }
 
@@ -235,7 +238,7 @@ namespace SharedLibrary.Commands
         }
     }
 
-    class CFastRestart : Command
+    public class CFastRestart : Command
     {
         public CFastRestart(String N, String D, String U, Player.Permission P, int args, bool nT) : base(N, D, U, P, args, nT) { }
 
@@ -250,7 +253,7 @@ namespace SharedLibrary.Commands
         }
     }
 
-    class CMapRotate : Command
+    public class CMapRotate : Command
     {
         public CMapRotate(String N, String D, String U, Player.Permission P, int args, bool nT) : base(N, D, U, P, args, nT) { }
 
@@ -265,7 +268,7 @@ namespace SharedLibrary.Commands
         }
     }
 
-    class CSetLevel : Command
+    public class CSetLevel : Command
     {
         public CSetLevel(String N, String D, String U, Player.Permission P, int args, bool nT) : base(N, D, U, P, args, nT) { }
 
@@ -282,12 +285,20 @@ namespace SharedLibrary.Commands
             if (newPerm == Player.Permission.Owner && E.Origin.Level != Player.Permission.Console)
                 newPerm = Player.Permission.Banned;
 
+            if (newPerm == Player.Permission.Owner && !E.Owner.Config.AllowMultipleOwners)
+            {
+                await E.Origin.Tell("There can only be 1 owner. Modify your server configuration if multiple owners are required");
+                return;
+            }
+
             if (newPerm > Player.Permission.Banned)
             {
-                var ActiveClient = E.Owner.Manager.GetActiveClients().First(p => p.NetworkID == E.Target.NetworkID);
+                var ActiveClient = E.Owner.Manager.GetActiveClients().FirstOrDefault(p => p.NetworkID == E.Target.NetworkID);
                 ActiveClient?.SetLevel(newPerm);
 
-                await ActiveClient?.Tell("Congratulations! You have been promoted to ^3" + newPerm);
+                if (ActiveClient != null)
+                    await ActiveClient.Tell("Congratulations! You have been promoted to ^3" + newPerm);
+
                 await E.Origin.Tell($"{E.Target.Name} was successfully promoted!");
 
                 E.Target.SetLevel(newPerm);
@@ -299,7 +310,7 @@ namespace SharedLibrary.Commands
         }
     }
 
-    class CUsage : Command
+    public class CUsage : Command
     {
         public CUsage(String N, String D, String U, Player.Permission P, int args, bool nT) : base(N, D, U, P, args, nT) { }
 
@@ -309,7 +320,7 @@ namespace SharedLibrary.Commands
         }
     }
 
-    class CUptime : Command
+    public class CUptime : Command
     {
         public CUptime(String N, String D, String U, Player.Permission P, int args, bool nT) : base(N, D, U, P, args, nT) { }
 
@@ -320,7 +331,7 @@ namespace SharedLibrary.Commands
         }
     }
 
-    class CListAdmins : Command
+    public class CListAdmins : Command
     {
         public CListAdmins(String N, String D, String U, Player.Permission P, int args, bool nT) : base(N, D, U, P, args, nT) { }
 
@@ -340,14 +351,14 @@ namespace SharedLibrary.Commands
         }
     }
 
-    class CLoadMap : Command
+    public class CLoadMap : Command
     {
         public CLoadMap(String N, String D, String U, Player.Permission P, int args, bool nT) : base(N, D, U, P, args, nT) { }
 
         public override async Task ExecuteAsync(Event E)
         {
             string newMap = E.Data.Trim().ToLower();
-            foreach (Map m in E.Owner.maps)
+            foreach (Map m in E.Owner.Maps)
             {
                 if (m.Name.ToLower() == newMap || m.Alias.ToLower() == newMap)
                 {
@@ -364,7 +375,7 @@ namespace SharedLibrary.Commands
         }
     }
 
-    class CFindPlayer : Command
+    public class CFindPlayer : Command
     {
         public CFindPlayer(String N, String D, String U, Player.Permission P, int args, bool nT) : base(N, D, U, P, args, nT) { }
 
@@ -386,7 +397,7 @@ namespace SharedLibrary.Commands
         }
     }
 
-    class CFindAllPlayers : Command
+    public class CFindAllPlayers : Command
     {
         public CFindAllPlayers(String N, String D, String U, Player.Permission P, int args, bool nT) : base(N, D, U, P, args, nT) { }
 
@@ -432,13 +443,13 @@ namespace SharedLibrary.Commands
         }
     }
 
-    class CListRules : Command
+    public class CListRules : Command
     {
         public CListRules(String N, String D, String U, Player.Permission P, int args, bool nT) : base(N, D, U, P, args, nT) { }
 
         public override async Task ExecuteAsync(Event E)
         {
-            if (E.Owner.rules.Count < 1)
+            if (E.Owner.Rules.Count < 1)
             {
                 if (E.Message.IsBroadcastCommand())
                     await E.Owner.Broadcast("The server owner has not set any rules.");
@@ -448,7 +459,7 @@ namespace SharedLibrary.Commands
 
             else
             {
-                foreach (String r in E.Owner.rules)
+                foreach (String r in E.Owner.Rules)
                 {
                     if (E.Message.IsBroadcastCommand())
                         await E.Owner.Broadcast("- " + r);
@@ -459,7 +470,7 @@ namespace SharedLibrary.Commands
         }
     }
 
-    class CPrivateMessage : Command
+    public class CPrivateMessage : Command
     {
         public CPrivateMessage(String N, String D, String U, Player.Permission P, int args, bool nT) : base(N, D, U, P, args, nT) { }
 
@@ -471,7 +482,7 @@ namespace SharedLibrary.Commands
         }
     }
 
-    class CReload : Command
+    public class CReload : Command
     {
         public CReload(String N, String D, String U, Player.Permission P, int args, bool nT) : base(N, D, U, P, args, nT) { }
 
@@ -484,7 +495,7 @@ namespace SharedLibrary.Commands
         }
     }
 
-    class CFlag : Command
+    public class CFlag : Command
     {
         public CFlag(String N, String D, String U, Player.Permission P, int args, bool nT) : base(N, D, U, P, args, nT) { }
 
@@ -507,6 +518,7 @@ namespace SharedLibrary.Commands
                 E.Data = Utilities.RemoveWords(E.Data, 1);
                 E.Target.SetLevel(Player.Permission.Flagged);
                 E.Owner.Manager.GetClientPenalties().AddPenalty(new Penalty(Penalty.Type.Flag, E.Data, E.Target.NetworkID, E.Origin.NetworkID, DateTime.Now, E.Target.IP));
+                await E.Owner.ExecuteEvent(new Event(Event.GType.Flag, E.Data, E.Origin, E.Target, E.Owner));
                 await E.Origin.Tell("You have ^5flagged ^7" + E.Target.Name);
             }
 
@@ -514,7 +526,7 @@ namespace SharedLibrary.Commands
         }
     }
 
-    class CReport : Command
+    public class CReport : Command
     {
         public CReport(String N, String D, String U, Player.Permission P, int args, bool nT) : base(N, D, U, P, args, nT) { }
 
@@ -543,12 +555,11 @@ namespace SharedLibrary.Commands
 
             await E.Origin.Tell("Successfully reported " + E.Target.Name);
             await E.Owner.ExecuteEvent(new Event(Event.GType.Report, E.Data, E.Origin, E.Target, E.Owner));
-
             await E.Owner.ToAdmins(String.Format("^5{0}^7->^1{1}^7: {2}", E.Origin.Name, E.Target.Name, E.Data));
         }
     }
 
-    class CListReports : Command
+    public class CListReports : Command
     {
         public CListReports(String N, String D, String U, Player.Permission P, int args, bool nT) : base(N, D, U, P, args, nT) { }
 
@@ -572,7 +583,7 @@ namespace SharedLibrary.Commands
         }
     }
 
-    class CMask : Command
+    public class CMask : Command
     {
         public CMask(String N, String D, String U, Player.Permission P, int args, bool nT) : base(N, D, U, P, args, nT) { }
 
@@ -588,10 +599,12 @@ namespace SharedLibrary.Commands
                 E.Origin.Masked = true;
                 await E.Origin.Tell("You are now masked");
             }
+
+            E.Owner.Manager.GetClientDatabase().UpdatePlayer(E.Origin);
         }
     }
 
-    class CListBanInfo : Command
+    public class CListBanInfo : Command
     {
         public CListBanInfo(String N, String D, String U, Player.Permission P, int args, bool nT) : base(N, D, U, P, args, nT) { }
 
@@ -624,7 +637,7 @@ namespace SharedLibrary.Commands
         }
     }
 
-    class CListAlias : Command
+    public class CListAlias : Command
     {
         public CListAlias(String N, String D, String U, Player.Permission P, int args, bool nT) : base(N, D, U, P, args, nT) { }
 
@@ -665,7 +678,7 @@ namespace SharedLibrary.Commands
         }
     }
 
-    class CExecuteRCON : Command
+    public class CExecuteRCON : Command
     {
         public CExecuteRCON(String N, String D, String U, Player.Permission P, int args, bool nT) : base(N, D, U, P, args, nT) { }
 
@@ -679,7 +692,7 @@ namespace SharedLibrary.Commands
         }
     }
 
-    class CPlugins : Command
+    public class CPlugins : Command
     {
         public CPlugins(String N, String D, String U, Player.Permission P, int args, bool nT) : base(N, D, U, P, args, nT) { }